Research workbench

Yeast betaprime cop 1-604 with ktktn motif

Analyse Yeast betaprime cop 1-604 with ktktn motif in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2YNP
Type: protein
Length: 609 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Coatomer subunit beta'; Ktktn motif
UniProt: P41811
Pockets: 3 · best druggability 0.81

Structure

x-ray diffraction · 2 distinct chains · 3% helix, 51% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Coatomer subunit beta'	protein	601	3% helix, 51% strand	P41811
P	Ktktn motif	protein	8	0% helix, 0% strand	—

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	707	0.81	0.85	58	empty
2	992	0.74	0.77	58	empty
3	213	0.53	0.77	27	empty

Interfaces

1 interface between chains.

A–P · 354 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

2YNP · yeast betaprime COP 1-604 with KTKTN motif · the same entry in another collection · chain A against A, TM-score 1.00
P41811 · AlphaFold monomer V2.0 prediction for coatomer subunit beta' (P41811) · a predicted model of the same protein · chain A against A, TM-score 0.62

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P41811
Elsewhere: RCSB PDB 2YNP · PDBe 2YNP · UniProt P41811

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