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Solution structure of the QUA1 dimerization domain of pxqua, the xenopus ortholog of quaking.

Analyse Solution structure of the QUA1 dimerization domain of pxqua, the xenopus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2YMJ
Type: protein
Length: 104 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein quaking-a
UniProt: Q32NN2
Pockets: 1 · best druggability 0.39

Structure

solution nmr · 1 distinct chain · 63% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Protein quaking-a	protein	52	63% helix, 0% strand	Q32NN2

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	74	0.39	0.78	11	empty

Interfaces

1 interface between chains.

A–B · 1332 Å² buried · 22 hydrogen bonds · protein-protein

Compared structures

2YMJ · Solution structure of the QUA1 dimerization domain of pXqua, the Xenopus ortholog of… · the same entry in another collection · chain B against B, TM-score 1.00
Q32NN2 · AlphaFold monomer V2.0 prediction for protein quaking-a (Q32NN2) · a predicted model of the same protein · chain A against A, TM-score 0.74

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q32NN2
Elsewhere: RCSB PDB 2YMJ · PDBe 2YMJ · UniProt Q32NN2

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