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Structure of bacteriophage T4 gene product 11, the interface between the baseplate and short tail fibers

Analyse Structure of bacteriophage T4 gene product 11, the interface between the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1EL6
Type: protein
Length: 624 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Baseplate structural protein GP11
UniProt: P10929
Pockets: 4 · best druggability 0.84

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Baseplate structural protein GP11	protein	208	17% helix, 36% strand	P10929

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	286	0.84	0.94	38	empty
2	92	0.34	0.74	20	empty
3	93	0.33	0.73	17	empty
4	74	0.33	0.75	20	empty

Interfaces

3 interfaces between chains.

B–C · 2367 Å² buried · 37 hydrogen bonds · protein-protein
A–C · 2362 Å² buried · 34 hydrogen bonds · protein-protein
A–B · 2327 Å² buried · 31 hydrogen bonds · protein-protein

Compared structures

1EL6 · Structure of bacteriophage T4 gene product 11, the interface between the baseplate and… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P10929
Elsewhere: RCSB PDB 1EL6 · PDBe 1EL6 · UniProt P10929

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