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Structural and functional insights of DR2231 protein, the mazg-like nucleoside triphosphate pyrophosphohydrolase from deinococcus radiodurans, native form

Analyse Structural and functional insights of DR2231 protein, the mazg-like nucleoside… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2YF9
Type: protein
Length: 141 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mazg-like nucleoside triphosphate pyrophosphohydrolase
EC: 3.6.1.19
UniProt: Q9RS96
Ligands: CL
Pockets: 1 · best druggability 0.38

Structure

x-ray diffraction · 1 distinct chain · 64% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mazg-like nucleoside triphosphate pyrophosphohydrolase (EC 3.6.1.19)	protein	141	64% helix, 1% strand	Q9RS96

Ligands and binding sites

CL · Chloride ion · ion · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	72	0.38	0.78	16	empty

Compared structures

2YF9 · Structural and functional insights of DR2231 protein, the mazg-like nucleoside… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RS96
Elsewhere: RCSB PDB 2YF9 · PDBe 2YF9 · UniProt Q9RS96

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