Research workbench
Crystal structure of RV0371C complex with manganese from mycobacterium tuberculosis H37RV
Analyse Crystal structure of RV0371C complex with manganese from mycobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2YES
- Type
- protein
- Length
- 370 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Moca-related protein
- UniProt
- O53706
- Ligands
- MN
- Pockets
- 4 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Moca-related protein | protein | 184 | 34% helix, 27% strand | O53706 |
| B | Moca-related protein | protein | 186 | 34% helix, 27% strand | O53706 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 2 copies · chains A, B
- GOL · Glycerol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 218 | 0.60 | 0.81 | 32 | GOL |
| 2 | 209 | 0.55 | 0.78 | 32 | MN, GOL |
| 3 | 65 | 0.37 | 0.78 | 14 | empty |
| 4 | 107 | 0.36 | 0.74 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 503 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (oxidation).
Compared structures
- 2YES · Crystal Structure of Rv0371C complex with Manganese from Mycobacterium Tuberculosis H37Rv · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O53706
- Elsewhere: RCSB PDB 2YES · PDBe 2YES · UniProt O53706
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.