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A39L mutation of scorpion toxin lqh-alpha-it

Analyse A39L mutation of scorpion toxin lqh-alpha-it in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
2YEO
Type
protein
Length
65 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Alpha-insect toxin lqhait
UniProt
P17728
Ligands
DR8, DR0, CL

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 46% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AAlpha-insect toxin lqhaitprotein6515% helix, 46% strandP17728

Ligands and binding sites

  • DR8 · N,N,N-trimethylhepta-1,3,5-triyn-1-aminium · ligand · chains A
  • DR0 · N-(hydroxymethyl)-N,N-dimethylhexan-1-aminium · ligand · chains A
  • CL · Chloride ion · ion · 3 copies · chains A
  • EDO · 1,2-ethanediol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

  • 2YEO · A39L mutation of scorpion toxin lqh-alpha-it · the same entry in another collection · chain A against A, TM-score 1.00
  • P17728 · AlphaFold monomer V2.0 prediction for alpha-insect toxin lqhait (P17728) · a predicted model of the same protein · chain A against A, TM-score 0.97

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