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Crystal structure of the N-terminal IG1-2 module of human receptor protein tyrosine phosphatase delta
Analyse Crystal structure of the N-terminal IG1-2 module of human receptor protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2YD6
- Type
- protein
- Length
- 195 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ptprd protein
- EC
- 3.1.3.48
- UniProt
- Q3KPJ2
- Ligands
- CL
- Pockets
- 1 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 60% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ptprd protein (EC 3.1.3.48) | protein | 195 | 5% helix, 60% strand | Q3KPJ2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 101 | 0.42 | 0.78 | 21 | CL |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 2YD6 · Crystal structure of the N-terminal Ig1-2 module of Human Receptor Protein Tyrosine… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3KPJ2
- Elsewhere: RCSB PDB 2YD6 · PDBe 2YD6 · UniProt Q3KPJ2
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