Research workbench
NMR and molecular modeling reveal that different hydrogen bonding patterns are possible for gu pairs: one hydrogen bond for each gu pair in R(GGCGUGCC)2 and two for each gu pair in R(GAGUGCUC)2
Analyse NMR and molecular modeling reveal that different hydrogen bonding patterns are… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1EKD
- Type
- RNA
- Length
- 16 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(*GP*GP*CP*GP*UP*GP*CP*C)-3')
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | RNA (5'-R(*GP*GP*CP*GP*UP*GP*CP*C)-3') | rna | 8 | — | — |
Interfaces
1 interface between chains.
- A–B · 398 Ų buried · 38 hydrogen bonds · nucleic-nucleic
Compared structures
- 1EKD · NMR and molecular modeling reveal that different hydrogen bonding patterns are possible… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1EKD · PDBe 1EKD
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