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Crystal structure of the ribosome recycling factor (rrf) from escherichia COLI

Analyse Crystal structure of the ribosome recycling factor (rrf) from escherichia COLI in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
1EK8
Type
protein
Length
185 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Ribosome recycling factor
UniProt
P0A805
Ligands
DEM, HG

Structure

x-ray diffraction · 1 distinct chain · 61% helix, 16% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ARibosome recycling factorprotein18561% helix, 16% strandP0A805

Ligands and binding sites

  • DEM · Decyloxy-methanol · ligand · chains A
  • HG · Mercury (II) ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 1EK8 · Crystal structure of the ribosome recycling factor (rrf) from escherichia COLI · the same entry in another collection · chain A against A, TM-score 1.00
  • P0A805 · AlphaFold monomer V2.0 prediction for ribosome-recycling factor (P0A805) · a predicted model of the same protein · chain A against A, TM-score 0.65

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