Research workbench
Three-dimensional model of SALMONELLA'S needle complex at subnanometer resolution
Analyse Three-dimensional model of SALMONELLA'S needle complex at subnanometer… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2Y9K
- Type
- protein
- Length
- 2,055 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein invg
- UniProt
- P35672
- Pockets
- 20 · best druggability 0.58
Structure
electron microscopy · 1 distinct chain · 40% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O | Protein invg | protein | 137 | 40% helix, 30% strand | P35672 |
Pockets
20 pockets found on a 1 Å grid, 18 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 368 | 0.58 | 0.75 | 38 | empty |
| 2 | 368 | 0.57 | 0.75 | 35 | empty |
| 3 | 351 | 0.56 | 0.75 | 36 | empty |
| 4 | 349 | 0.56 | 0.75 | 34 | empty |
| 5 | 351 | 0.56 | 0.75 | 34 | empty |
Interfaces
15 interfaces between chains.
- B–I · 524 Ų buried · 7 hydrogen bonds · protein-protein
- L–N · 524 Ų buried · 7 hydrogen bonds · protein-protein
- G–J · 524 Ų buried · 7 hydrogen bonds · protein-protein
- C–F · 521 Ų buried · 7 hydrogen bonds · protein-protein
- I–O · 521 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 2Y9K · Three-dimensional model of Salmonella's needle complex at subnanometer resolution · the same entry in another collection · chain O against O, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35672
- Elsewhere: RCSB PDB 2Y9K · PDBe 2Y9K · UniProt P35672
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