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Structure of PSB27 from thermosynechococcus elongatus

Analyse Structure of PSB27 from thermosynechococcus elongatus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2Y6X
Type: protein
Length: 109 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Photosystem II 11 kd protein
UniProt: Q8DG60
Ligands: CL
Pockets: 1 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 75% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Photosystem II 11 kd protein	protein	109	75% helix, 0% strand	Q8DG60

Ligands and binding sites

CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	85	0.59	0.88	20	empty

Compared structures

2Y6X · Structure of Psb27 from Thermosynechococcus elongatus · the same entry in another collection · chain A against A, TM-score 1.00
Q8DG60 · AlphaFold monomer V2.0 prediction for photosystem II lipoprotein PSB27 (Q8DG60) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8DG60
Elsewhere: RCSB PDB 2Y6X · PDBe 2Y6X · UniProt Q8DG60

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