Research workbench
Structure of human ferredoxin 2 (FDX2)IN complex with 2FE2S cluster
Analyse Structure of human ferredoxin 2 (FDX2)IN complex with 2FE2S cluster in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2Y5C
- Type
- protein
- Length
- 214 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Adrenodoxin-like protein, mitochondrial
- UniProt
- Q6P4F2
- Ligands
- FES, SO4
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Adrenodoxin-like protein, mitochondrial | protein | 107 | 23% helix, 24% strand | Q6P4F2 |
Ligands and binding sites
- FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.36 | 0.78 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 322 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 2Y5C · Structure of human ferredoxin 2 (Fdx2)in complex with 2Fe2S cluster · the same entry in another collection · chain A against A, TM-score 1.00
- Q6P4F2 · AlphaFold monomer V2.0 prediction for ferredoxin-2, mitochondrial (Q6P4F2) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6P4F2
- Elsewhere: RCSB PDB 2Y5C · PDBe 2Y5C · UniProt Q6P4F2
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