Research workbench

Blv tm hairpin

Analyse Blv tm hairpin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2XZ3
Type: protein
Length: 459 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Maltose ABC transporter periplasmic protein, envelope glycoprotein
UniProt: D8A942, Q90M13
Ligands: GLC, CL
Pockets: 4 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 51% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Maltose ABC transporter periplasmic protein, envelope glycoprotein	protein	459	51% helix, 17% strand	D8A942, Q90M13

Ligands and binding sites

GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A
CL · Chloride ion · ion · chains A
EDO · 1,2-ethanediol · additive · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	484	0.72	0.81	46	GLC
2	64	0.41	0.80	17	EDO
3	91	0.33	0.74	17	empty
4	63	0.29	0.74	16	EDO

Compared structures

2XZ3 · BLV TM hairpin · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D8A942
Every structure of UniProt Q90M13
Elsewhere: RCSB PDB 2XZ3 · PDBe 2XZ3 · UniProt D8A942 · UniProt Q90M13

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