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Vibrio cholerae colonization factor gbpa crystal structure
Analyse Vibrio cholerae colonization factor gbpa crystal structure in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2XWX
- Type
- protein
- Length
- 770 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glcnac-binding protein a
- UniProt
- Q9KLD5
- Pockets
- 7 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Glcnac-binding protein a | protein | 385 | 11% helix, 45% strand | Q9KLD5 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 887 | 0.83 | 0.85 | 130 | empty |
| 2 | 546 | 0.69 | 0.79 | 62 | empty |
| 3 | 425 | 0.61 | 0.77 | 43 | empty |
| 4 | 95 | 0.50 | 0.82 | 17 | empty |
| 5 | 73 | 0.46 | 0.83 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 3357 Ų buried · 43 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KLD5
- Elsewhere: RCSB PDB 2XWX · PDBe 2XWX · UniProt Q9KLD5
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