Research workbench
Anaerobic cobalt chelatase (cbik) from salmonella typhimurium in complex with metalated tetrapyrrole
Analyse Anaerobic cobalt chelatase (cbik) from salmonella typhimurium in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2XWP
- Type
- protein
- Length
- 257 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sirohydrochlorin cobaltochelatase
- EC
- 4.99.1.3
- UniProt
- Q05592
- Ligands
- SIR
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sirohydrochlorin cobaltochelatase (EC 4.99.1.3) | protein | 257 | 49% helix, 18% strand | Q05592 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 337 | 0.70 | 0.83 | 38 | SIR |
Compared structures
- 2XWP · ANAEROBIC COBALT CHELATASE (CbiK) FROM SALMONELLA TYPHIMURIUM IN COMPLEX WITH METALATED… · the same entry in another collection · chain A against A, TM-score 1.00
- Q05592 · AlphaFold monomer V2.0 prediction for sirohydrochlorin cobaltochelatase (Q05592) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q05592
- Elsewhere: RCSB PDB 2XWP · PDBe 2XWP · UniProt Q05592
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