Research workbench
Human serum albumin complexed with dansyl-L-norvaline
Analyse Human serum albumin complexed with dansyl-L-norvaline in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2XW1
- Type
- protein
- Length
- 1,135 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Serum albumin
- UniProt
- P02768
- Ligands
- 9NV
- Pockets
- 16 · best druggability 0.84
Structure
x-ray diffraction · 2 distinct chains · 73% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serum albumin | protein | 569 | 74% helix, 0% strand | P02768 |
| B | Serum albumin | protein | 566 | 73% helix, 0% strand | P02768 |
Ligands and binding sites
- 9NV · Dansyl-L-norvaline · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
16 pockets found on a 1 Å grid, 11 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 847 | 0.84 | 0.86 | 99 | empty |
| 2 | 808 | 0.80 | 0.83 | 82 | empty |
| 3 | 188 | 0.70 | 0.87 | 24 | 9NV |
| 4 | 197 | 0.70 | 0.87 | 23 | 9NV |
| 5 | 448 | 0.70 | 0.80 | 51 | empty |
Modifications
Observed in the structure: 34 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02768
- Elsewhere: RCSB PDB 2XW1 · PDBe 2XW1 · UniProt P02768
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