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Uda uncomplexed form. crystal structure of urtica dioica agglutinin, a superantigen presented by MHC molecules of class I and class II

Analyse Uda uncomplexed form. crystal structure of urtica dioica agglutinin, a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1EIS
Type: protein
Length: 86 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (agglutinin isolectin VI/AGGLUTININ isolectin V)
UniProt: Q9SYR5
Pockets: 1 · best druggability 0.29

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein (agglutinin isolectin VI/AGGLUTININ isolectin V)	protein	86	28% helix, 23% strand	Q9SYR5

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.29	0.76	15	empty

Modifications

Observed in the structure: 8 disulfide, 1 modified (disulfide, cyclization).

Compared structures

1EIS · Uda uncomplexed form. crystal structure of urtica dioica agglutinin, a superantigen… · the same entry in another collection · chain A against A, TM-score 1.00

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Every structure of UniProt Q9SYR5
Elsewhere: RCSB PDB 1EIS · PDBe 1EIS · UniProt Q9SYR5

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