Research workbench
Solution structure of RNA polymerase subunit RPB5 from methanobacterium thermoautotrophicum
Analyse Solution structure of RNA polymerase subunit RPB5 from methanobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1EIK
- Type
- protein
- Length
- 77 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA polymerase subunit RPB5
- EC
- 2.7.7.6
- UniProt
- O27122
- Pockets
- 1 · best druggability 0.37
Structure
solution nmr · 1 distinct chain · 22% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase subunit RPB5 (EC 2.7.7.6) | protein | 77 | 22% helix, 30% strand | O27122 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 91 | 0.37 | 0.75 | 13 | empty |
Compared structures
- 1EIK · Solution Structure of RNA Polymerase Subunit RPB5 from Methanobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
- O27122 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit H (O27122) · a predicted model of the same protein · chain A against A, TM-score 0.63
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O27122
- Elsewhere: RCSB PDB 1EIK · PDBe 1EIK · UniProt O27122
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