Research workbench
The crystal structure of a thermus thermophilus trnagly acceptor stem microhelix at 1.6 angstroem resolution
Analyse The crystal structure of a thermus thermophilus trnagly acceptor stem… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2XSL
- Type
- RNA
- Length
- 28 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*GP*CP*GP*GP*GP*AP*G)-3'; 5'-R(*CP*UP*CP*CP*CP*GP*C)-3'
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | 5'-R(*GP*CP*GP*GP*GP*AP*G)-3' | rna | 7 | — | — |
| B, D | 5'-R(*CP*UP*CP*CP*CP*GP*C)-3' | rna | 7 | — | — |
Interfaces
5 interfaces between chains.
- C–D · 359 Ų buried · 41 hydrogen bonds · nucleic-nucleic
- A–B · 354 Ų buried · 33 hydrogen bonds · nucleic-nucleic
- A–C · 108 Ų buried · 1 hydrogen bond · nucleic-nucleic
- B–C · 90 Ų buried · 1 hydrogen bond · nucleic-nucleic
- A–D · 89 Ų buried · 1 hydrogen bond · nucleic-nucleic
Compared structures
- 2XSL · The crystal structure of a Thermus thermophilus tRNAGly acceptor stem microhelix at 1.6… · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2XSL · PDBe 2XSL
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