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Crystal structure of a D-aminopeptidase from ochrobactrum anthropi

Analyse Crystal structure of a D-aminopeptidase from ochrobactrum anthropi in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1EI5
Type: protein
Length: 518 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: D-aminopeptidase
EC: 3.4.11.19
UniProt: Q9ZBA9
Pockets: 4 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	D-aminopeptidase (EC 3.4.11.19)	protein	518	25% helix, 35% strand	Q9ZBA9

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	728	0.71	0.78	45	empty
2	71	0.50	0.85	22	empty
3	65	0.40	0.80	17	empty
4	88	0.39	0.77	24	empty

Compared structures

1EI5 · Crystal structure of a D-aminopeptidase from ochrobactrum anthropi · the same entry in another collection · chain A against A, TM-score 1.00
Q9ZBA9 · AlphaFold monomer V2.0 prediction for D-aminopeptidase (Q9ZBA9) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9ZBA9
Elsewhere: RCSB PDB 1EI5 · PDBe 1EI5 · UniProt Q9ZBA9

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