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The crystal structure of yeast phenylalanine tRNA at 1.93 a resolution

Analyse The crystal structure of yeast phenylalanine tRNA at 1.93 a resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1EHZ
Type: RNA
Length: 76 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transfer RNA (phe)
Ligands: MG, MN
Pockets: 2 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Transfer RNA (phe)	rna	76	—	—

Ligands and binding sites

MG · Magnesium ion · metal · 6 copies · chains A
MN · Manganese (II) ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	548	0.61	0.75	31	MG, MN
2	300	0.53	0.76	19	MG

Modifications

Observed in the structure: 14 modified (nucleotide modification).

Compared structures

1EHZ · The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1EHZ · PDBe 1EHZ

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