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Crystal structure of YCF48 from thermosynechococcus elongatus

Analyse Crystal structure of YCF48 from thermosynechococcus elongatus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2XBG
Type: protein
Length: 308 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: YCF48-like protein
UniProt: Q8DI95
Pockets: 1 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 1% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	YCF48-like protein	protein	308	1% helix, 47% strand	Q8DI95

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	751	0.73	0.79	51	empty

Compared structures

2XBG · Crystal Structure of YCF48 from Thermosynechococcus elongatus · the same entry in another collection · chain A against A, TM-score 1.00
Q8DI95 · AlphaFold monomer V2.0 prediction for YCF48-like protein (Q8DI95) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8DI95
Elsewhere: RCSB PDB 2XBG · PDBe 2XBG · UniProt Q8DI95

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