Research workbench

Crystal structure of thermotoga maritima endonuclease IV in the presence of zinc

Analyse Crystal structure of thermotoga maritima endonuclease IV in the presence of zinc in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2X7V
Type: protein
Length: 286 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable endonuclease 4
EC: 3.1.21.2
UniProt: Q9WYJ7
Ligands: ZN
Pockets: 1 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable endonuclease 4 (EC 3.1.21.2)	protein	286	45% helix, 15% strand	Q9WYJ7

Ligands and binding sites

ZN · Zinc ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	230	0.50	0.75	38	ZN

Compared structures

2X7V · Crystal structure of Thermotoga maritima endonuclease IV in the presence of zinc · the same entry in another collection · chain A against A, TM-score 1.00
Q9WYJ7 · AlphaFold monomer V2.0 prediction for probable endonuclease 4 (Q9WYJ7) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9WYJ7
Elsewhere: RCSB PDB 2X7V · PDBe 2X7V · UniProt Q9WYJ7

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.