Research workbench
Crystal structure of SSO6206 from sulfolobus solfataricus P2
Analyse Crystal structure of SSO6206 from sulfolobus solfataricus P2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2X3D
- Type
- protein
- Length
- 720 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SSO6206
- UniProt
- Q97ZR0
- Pockets
- 8 · best druggability 0.36
Structure
x-ray diffraction · 3 distinct chains · 21% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, E, G | SSO6206 | protein | 90 | 21% helix, 48% strand | Q97ZR0 |
| D, H | SSO6206 | protein | 91 | 21% helix, 46% strand | Q97ZR0 |
| F | SSO6206 | protein | 88 | 22% helix, 49% strand | Q97ZR0 |
Pockets
8 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 83 | 0.36 | 0.76 | 17 | empty |
| 2 | 81 | 0.36 | 0.76 | 15 | empty |
| 3 | 76 | 0.35 | 0.76 | 16 | empty |
| 4 | 69 | 0.35 | 0.76 | 16 | empty |
| 5 | 61 | 0.34 | 0.77 | 15 | empty |
Interfaces
9 interfaces between chains.
- C–D · 823 Ų buried · 14 hydrogen bonds · protein-protein
- G–H · 797 Ų buried · 14 hydrogen bonds · protein-protein
- A–H · 772 Ų buried · 15 hydrogen bonds · protein-protein
- D–E · 758 Ų buried · 14 hydrogen bonds · protein-protein
- A–B · 738 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 2X3D · Crystal Structure of SSo6206 from Sulfolobus solfataricus P2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97ZR0
- Elsewhere: RCSB PDB 2X3D · PDBe 2X3D · UniProt Q97ZR0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.