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The flavoprotein nrdi from bacillus cereus with the initially oxidized FMN cofactor in an intermediate radiation reduced state

Analyse The flavoprotein nrdi from bacillus cereus with the initially oxidized FMN… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2X2O
Type: protein
Length: 117 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nrdi protein
UniProt: Q81G57
Ligands: FMN, ZN
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nrdi protein	protein	117	44% helix, 24% strand	Q81G57

Ligands and binding sites

FMN · Flavin mononucleotide · ligand · chains A
ZN · Zinc ion · metal · 4 copies · chains A
CAC · Cacodylate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	72	0.39	0.79	20	FMN

Compared structures

2X2O · The flavoprotein NrdI from Bacillus cereus with the initially oxidized FMN cofactor in an… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q81G57
Elsewhere: RCSB PDB 2X2O · PDBe 2X2O · UniProt Q81G57

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