Research workbench
Periplasmic ferric siderophore binding protein fhud complexed with gallichrome
Analyse Periplasmic ferric siderophore binding protein fhud complexed with gallichrome in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1EFD
- Type
- protein
- Length
- 262 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferrichrome-binding periplasmic protein
- UniProt
- P07822
- Ligands
- GCR
- Pockets
- 1 · best druggability 0.31
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| N | Ferrichrome-binding periplasmic protein | protein | 262 | 43% helix, 17% strand | P07822 |
Ligands and binding sites
- GCR · Gallichrome · ligand · chains N
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.31 | 0.74 | 17 | GCR |
Compared structures
- 1EFD · Periplasmic ferric siderophore binding protein fhud complexed with gallichrome · the same entry in another collection · chain N against N, TM-score 1.00
- P07822 · AlphaFold monomer V2.0 prediction for IRON(3+)-hydroxamate-binding protein fhud (P07822) · a predicted model of the same protein · chain N against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07822
- Elsewhere: RCSB PDB 1EFD · PDBe 1EFD · UniProt P07822
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