Research workbench
3D-structure of the modular autolysin lytc from streptococcus pneumoniae in complex with synthetic peptidoglycan ligand
Analyse 3D-structure of the modular autolysin lytc from streptococcus pneumoniae in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2WWC
- Type
- protein
- Length
- 431 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 1,4-beta-N-acetylmuramidase
- EC
- 3.2.1.17
- UniProt
- Q9Z4J8
- Ligands
- CHT
- Pockets
- 2 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 1,4-beta-N-acetylmuramidase (EC 3.2.1.17) | protein | 431 | 17% helix, 38% strand | Q9Z4J8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 206 | 0.47 | 0.74 | 30 | GOL |
| 2 | 90 | 0.33 | 0.74 | 18 | GOL |
Compared structures
- 2WWC · 3D-structure of the modular autolysin LytC from Streptococcus pneumoniae in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Z4J8
- Elsewhere: RCSB PDB 2WWC · PDBe 2WWC · UniProt Q9Z4J8
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