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Structure of the peroxisomal 3-ketoacyl-CoA thiolase from sunflower

Analyse Structure of the peroxisomal 3-ketoacyl-CoA thiolase from sunflower in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2WUA
Type: protein
Length: 786 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Acetoacetyl CoA thiolase
EC: 2.3.1.16
UniProt: Q6W6X6
Pockets: 11 · best druggability 0.65

Structure

x-ray diffraction · 2 distinct chains · 42% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Acetoacetyl CoA thiolase (EC 2.3.1.16)	protein	392	42% helix, 22% strand	Q6W6X6
B	Acetoacetyl CoA thiolase (EC 2.3.1.16)	protein	394	41% helix, 23% strand	Q6W6X6

Pockets

11 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	395	0.65	0.78	52	empty
2	299	0.64	0.80	43	empty
3	106	0.47	0.80	18	empty
4	116	0.46	0.79	35	empty
5	92	0.43	0.79	16	empty

Interfaces

1 interface between chains.

A–B · 2685 Å² buried · 57 hydrogen bonds · protein-protein

Compared structures

2WUA · Structure of the peroxisomal 3-ketoacyl-CoA thiolase from Sunflower · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6W6X6
Elsewhere: RCSB PDB 2WUA · PDBe 2WUA · UniProt Q6W6X6

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