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High resolution 3D structure of C.ELEGANS globin-like protein glb-1

Analyse High resolution 3D structure of C.ELEGANS globin-like protein glb-1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2WTG
Type: protein
Length: 158 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Globin-like protein
UniProt: P30627
Ligands: HEM, OXY
Pockets: 2 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 74% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Globin-like protein	protein	158	74% helix, 0% strand	P30627

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
OXY · Oxygen molecule · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	285	0.72	0.85	29	HEM, OXY
2	52	0.44	0.83	11	empty

Compared structures

2WTG · High resolution 3D structure of C.elegans globin-like protein GLB-1 · the same entry in another collection · chain A against A, TM-score 1.00
P30627 · AlphaFold monomer V2.0 prediction for globin-like protein (P30627) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P30627
Elsewhere: RCSB PDB 2WTG · PDBe 2WTG · UniProt P30627

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