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Structure of a complex between the DNA sequence dcgcgaattcgcg and BIS[PIPERIDINO-ethyl]-furamidine

Analyse Structure of a complex between the DNA sequence dcgcgaattcgcg and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1EEL
Type: DNA
Length: 24 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'
Ligands: D24

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3'	dna	12	—	—

Ligands and binding sites

D24 · 2,5-bis-[4-[cyclopenta-1,3-dien-5-ylamino-1-aminomethyl]-phen-1-yl]furan · ligand · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 573 Å² buried · 64 hydrogen bonds · nucleic-nucleic

Compared structures

1EEL · Structure of a complex between the DNA sequence dcgcgaattcgcg and… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1EEL · PDBe 1EEL

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