Research workbench
Clavulanic acid biosynthesis oligopeptide binding protein 2
Analyse Clavulanic acid biosynthesis oligopeptide binding protein 2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2WOL
- Type
- protein
- Length
- 553 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Clavulanic acid biosynthesis oligopeptide binding protein 2
- UniProt
- Q8KRB4
- Pockets
- 3 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Clavulanic acid biosynthesis oligopeptide binding protein 2 | protein | 553 | 31% helix, 20% strand | Q8KRB4 |
Ligands and binding sites
- GOL · Glycerol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1025 | 0.77 | 0.79 | 97 | GOL |
| 2 | 150 | 0.46 | 0.77 | 29 | empty |
| 3 | 75 | 0.38 | 0.78 | 22 | empty |
Compared structures
- 2WOL · Clavulanic acid biosynthesis oligopeptide binding protein 2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8KRB4
- Elsewhere: RCSB PDB 2WOL · PDBe 2WOL · UniProt Q8KRB4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.