Research workbench
A(GGGG)A hexad pairing aligment for the D(G-G-a-G-G-a-G) sequence
Analyse A(GGGG)A hexad pairing aligment for the D(G-G-a-G-G-a-G) sequence in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1EEG
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*GP*GP*AP*GP*GP*A)-3')
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | DNA (5'-D(*GP*GP*AP*GP*GP*A)-3') | dna | 6 | — | — |
Interfaces
6 interfaces between chains.
- B–C · 282 Ų buried · 9 hydrogen bonds · nucleic-nucleic
- A–D · 273 Ų buried · 8 hydrogen bonds · nucleic-nucleic
- C–D · 217 Ų buried · 22 hydrogen bonds · nucleic-nucleic
- A–B · 213 Ų buried · 18 hydrogen bonds · nucleic-nucleic
- A–C · 73 Ų buried · 4 hydrogen bonds · nucleic-nucleic
Compared structures
- 1EEG · A(GGGG)A hexad pairing aligment for the D(G-G-a-G-G-a-G) sequence · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1EEG · PDBe 1EEG
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