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Equine rhinitis a virus

Analyse Equine rhinitis a virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2WFF
Type: protein
Length: 712 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: P1
UniProt: B9VV85
Pockets: 7 · best druggability 0.55

Structure

x-ray diffraction · 4 distinct chains · 7% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
1	P1	protein	246	4% helix, 20% strand	B9VV85
2	P1	protein	219	7% helix, 33% strand	B9VV85
3	P1	protein	226	8% helix, 28% strand	B9VV85
4	P1	protein	21	14% helix, 5% strand	B9VV85

Pockets

7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	120	0.55	0.82	25	empty
2	90	0.46	0.80	14	empty
3	126	0.45	0.77	21	empty
4	130	0.42	0.75	27	empty
5	152	0.40	0.73	23	empty

Interfaces

5 interfaces between chains.

1–3 · 4062 Å² buried · 56 hydrogen bonds · protein-protein
1–2 · 1483 Å² buried · 24 hydrogen bonds · protein-protein
2–3 · 1315 Å² buried · 13 hydrogen bonds · protein-protein
3–4 · 657 Å² buried · 11 hydrogen bonds · protein-protein
1–4 · 380 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

2WFF · Equine Rhinitis A Virus · the same entry in another collection · chain 1 against 1, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B9VV85
Elsewhere: RCSB PDB 2WFF · PDBe 2WFF · UniProt B9VV85

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