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High resolution structure of the apo form of the orange protein (orp) from desulfovibrio gigas

Analyse High resolution structure of the apo form of the orange protein (orp) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2WFB
Type: protein
Length: 120 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative uncharacterized protein orp
UniProt: Q5DUA6
Ligands: PO4
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative uncharacterized protein orp	protein	120	28% helix, 27% strand	Q5DUA6

Ligands and binding sites

PO4 · Phosphate ion · ion · 3 copies · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	73	0.35	0.76	17	PO4

Compared structures

2WFB · High resolution structure of the apo form of the orange protein (ORP) from Desulfovibrio… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5DUA6
Elsewhere: RCSB PDB 2WFB · PDBe 2WFB · UniProt Q5DUA6

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