Research workbench
Structure of bmori GOBP2 (general odorant binding protein 2) with bombykal
Analyse Structure of bmori GOBP2 (general odorant binding protein 2) with bombykal in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2WCH
- Type
- protein
- Length
- 141 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- General odorant-binding protein 1
- UniProt
- P34170
- Ligands
- B7M, MG
- Pockets
- 1 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 65% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | General odorant-binding protein 1 | protein | 141 | 65% helix, 1% strand | P34170 |
Ligands and binding sites
- B7M · (10E,12Z)-hexadeca-10,12-dienal · ligand · chains A
- MG · Magnesium ion · metal · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 195 | 0.85 | 0.98 | 24 | B7M |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 2WCH · Structure of BMori GOBP2 (General Odorant Binding Protein 2) with bombykal · the same entry in another collection · chain A against A, TM-score 1.00
- P34170 · AlphaFold monomer V2.0 prediction for general odorant-binding protein 2 (P34170) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P34170
- Elsewhere: RCSB PDB 2WCH · PDBe 2WCH · UniProt P34170
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