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Crystal structure of the G2P (large terminase) nuclease domain from the bacteriophage SPP1

Analyse Crystal structure of the G2P (large terminase) nuclease domain from the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2WBN
Type: protein
Length: 178 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Terminase large subunit
UniProt: P54308
Pockets: 1 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Terminase large subunit	protein	178	33% helix, 27% strand	P54308

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	126	0.43	0.77	28	empty

Modifications

Observed in the structure: 1 modified (engineered).

Compared structures

2WBN · Crystal structure of the g2p (large terminase) nuclease domain from the bacteriophage SPP1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P54308
Elsewhere: RCSB PDB 2WBN · PDBe 2WBN · UniProt P54308

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