Research workbench
Structure of a family two carbohydrate esterase from clostridium thermocellum in complex with cellohexaose
Analyse Structure of a family two carbohydrate esterase from clostridium thermocellum… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2WAO
- Type
- protein
- Length
- 325 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endoglucanase E
- EC
- 3.2.1.4
- UniProt
- P10477
- Ligands
- BGC
- Pockets
- 3 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endoglucanase E (EC 3.2.1.4) | protein | 325 | 29% helix, 31% strand | P10477 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 5 copies · chains A
- FMT · Formic acid · additive · 11 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 151 | 0.53 | 0.80 | 23 | empty |
| 2 | 132 | 0.41 | 0.75 | 31 | BGC, FMT |
| 3 | 52 | 0.28 | 0.74 | 16 | FMT |
Compared structures
- 2WAO · Structure of a family two carbohydrate esterase from Clostridium thermocellum in complex… · the same entry in another collection · chain A against A, TM-score 1.00
- P10477 · AlphaFold monomer V2.0 prediction for CELLULASE/ESTERASE cele (P10477) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P10477
- Elsewhere: RCSB PDB 2WAO · PDBe 2WAO · UniProt P10477
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