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Extended tudor domain of drosophila melanogaster tudor-sn ( P100)

Analyse Extended tudor domain of drosophila melanogaster tudor-sn ( P100) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2WAC
Type: protein
Length: 432 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: CG7008-pa
UniProt: Q9W0S7
Pockets: 2 · best druggability 0.59

Structure

x-ray diffraction · 2 distinct chains · 31% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	CG7008-pa	protein	217	32% helix, 32% strand	Q9W0S7
B	CG7008-pa	protein	215	30% helix, 32% strand	Q9W0S7

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	347	0.59	0.77	44	empty
2	54	0.26	0.73	16	empty

Interfaces

1 interface between chains.

A–B · 248 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

2WAC · Extended Tudor domain of Drosophila Melanogaster Tudor-SN (p100) · the same entry in another collection · chain A against A, TM-score 1.00
Q9W0S7 · AlphaFold monomer V2.0 prediction for staphylococcal nuclease domain- containing protein… · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9W0S7
Elsewhere: RCSB PDB 2WAC · PDBe 2WAC · UniProt Q9W0S7

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