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Structure of D212, a nuclease from a fusselovirus.
Analyse Structure of D212, a nuclease from a fusselovirus. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2W8M
- Type
- protein
- Length
- 333 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Orf D212
- UniProt
- Q6TRV5
- Pockets
- 5 · best druggability 0.40
Structure
x-ray diffraction · 2 distinct chains · 40% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Orf D212 | protein | 165 | 41% helix, 26% strand | Q6TRV5 |
| B | Orf D212 | protein | 168 | 39% helix, 30% strand | Q6TRV5 |
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 129 | 0.40 | 0.74 | 19 | empty |
| 2 | 82 | 0.36 | 0.76 | 21 | empty |
| 3 | 98 | 0.33 | 0.73 | 18 | empty |
| 4 | 95 | 0.33 | 0.73 | 19 | empty |
| 5 | 59 | 0.29 | 0.74 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1129 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 2W8M · Structure of D212, a nuclease from a fusselovirus. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6TRV5
- Elsewhere: RCSB PDB 2W8M · PDBe 2W8M · UniProt Q6TRV5
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