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Structure of an N-terminally truncated nudix hydrolase DR2204 from deinococcus radiodurans

Analyse Structure of an N-terminally truncated nudix hydrolase DR2204 from deinococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2W4E
Type: protein
Length: 268 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MUTT/NUDIX family protein
EC: 3.6.1.13
UniProt: Q9RSC1
Pockets: 3 · best druggability 0.37

Structure

x-ray diffraction · 2 distinct chains · 30% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MUTT/NUDIX family protein (EC 3.6.1.13)	protein	137	28% helix, 40% strand	Q9RSC1
B	MUTT/NUDIX family protein (EC 3.6.1.13)	protein	131	32% helix, 37% strand	Q9RSC1

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	61	0.37	0.79	22	empty
2	68	0.36	0.78	21	empty
3	66	0.32	0.75	23	empty

Interfaces

1 interface between chains.

A–B · 1169 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

2W4E · Structure of an N-terminally truncated Nudix hydrolase DR2204 from Deinococcus radiodurans · the same entry in another collection · chain A against A, TM-score 1.00

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Every structure of UniProt Q9RSC1
Elsewhere: RCSB PDB 2W4E · PDBe 2W4E · UniProt Q9RSC1

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