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Crystal structure of the apo forms of rhodotorula graminis D-mandelate dehydrogenase at 1.8A.
Analyse Crystal structure of the apo forms of rhodotorula graminis D-mandelate… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2W2K
- Type
- protein
- Length
- 689 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D-mandelate dehydrogenase
- UniProt
- Q7LLW9
- Pockets
- 2 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 41% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D-mandelate dehydrogenase | protein | 345 | 41% helix, 16% strand | Q7LLW9 |
| B | D-mandelate dehydrogenase | protein | 344 | 41% helix, 16% strand | Q7LLW9 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 758 | 0.74 | 0.79 | 66 | empty |
| 2 | 739 | 0.71 | 0.78 | 62 | empty |
Interfaces
1 interface between chains.
- A–B · 2765 Ų buried · 35 hydrogen bonds · protein-protein
Compared structures
- 2W2K · Crystal structure of the apo forms of Rhodotorula graminis D- mandelate dehydrogenase at… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7LLW9
- Elsewhere: RCSB PDB 2W2K · PDBe 2W2K · UniProt Q7LLW9
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