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Crystal structure of P-coumaric acid decarboxylase from lactobacillus plantarum: structural insights into the active site and decarboxylation catalytic mechanism
Analyse Crystal structure of P-coumaric acid decarboxylase from lactobacillus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2W2A
- Type
- protein
- Length
- 350 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- P-coumaric acid decarboxylase
- UniProt
- Q88RY7
- Pockets
- 2 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | P-coumaric acid decarboxylase | protein | 175 | 20% helix, 39% strand | Q88RY7 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.74 | 0.98 | 22 | empty |
| 2 | 113 | 0.69 | 0.91 | 30 | empty |
Interfaces
1 interface between chains.
- A–B · 1228 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 2W2A · Crystal Structure of p-coumaric Acid Decarboxylase from Lactobacillus plantarum… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q88RY7
- Elsewhere: RCSB PDB 2W2A · PDBe 2W2A · UniProt Q88RY7
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