Research workbench
Crystal structure of mammalian fatty acid synthase in complex with NADP
Analyse Crystal structure of mammalian fatty acid synthase in complex with NADP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2VZ9
- Type
- protein
- Length
- 4,167 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fatty acid synthase
- EC
- 2.3.1.85
- UniProt
- A5YV76
- Ligands
- NAP
- Pockets
- 20 · best druggability 0.84
Structure
x-ray diffraction · 2 distinct chains · 33% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fatty acid synthase (EC 2.3.1.85) | protein | 2081 | 33% helix, 22% strand | A5YV76 |
| B | Fatty acid synthase (EC 2.3.1.85) | protein | 2086 | 33% helix, 21% strand | A5YV76 |
Ligands and binding sites
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 280 | 0.84 | 0.96 | 50 | empty |
| 2 | 1085 | 0.82 | 0.83 | 121 | empty |
| 3 | 511 | 0.80 | 0.87 | 51 | NAP |
| 4 | 1100 | 0.80 | 0.82 | 91 | empty |
| 5 | 678 | 0.79 | 0.84 | 70 | empty |
Interfaces
1 interface between chains.
- A–B · 5658 Ų buried · 82 hydrogen bonds · protein-protein
Compared structures
- 2VZ9 · Crystal Structure of Mammalian Fatty Acid Synthase in complex with NADP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5YV76
- Elsewhere: RCSB PDB 2VZ9 · PDBe 2VZ9 · UniProt A5YV76
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