Research workbench
Structure of RNA (5'-ggugggcgcagcuucggcugcgguaccac-3'), NMR, 5 structures
Analyse Structure of RNA (5'-ggugggcgcagcuucggcugcgguaccac-3'), NMR, 5 structures in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1EBR
- Type
- RNA
- Length
- 30 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HIV-1 rev responsive element RNA
- Pockets
- 2 · best druggability 0.34
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | HIV-1 rev responsive element RNA | rna | 30 | — | — |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 98 | 0.34 | 0.74 | 14 | empty |
| 2 | 56 | 0.24 | 0.73 | 13 | empty |
Compared structures
- 1EBR · Structure of RNA (5'-ggugggcgcagcuucggcugcgguaccac-3'), NMR, 5 structures · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1EBR · PDBe 1EBR
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