Research workbench

Mutant ALA55PHE of cerebratulus lacteus mini-hemoglobin

Analyse Mutant ALA55PHE of cerebratulus lacteus mini-hemoglobin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2VYZ
Type: protein
Length: 110 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Neural hemoglobin
UniProt: O76242
Ligands: HEM, OXY, SO4
Pockets: 1 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 73% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Neural hemoglobin	protein	110	73% helix, 0% strand	O76242

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
OXY · Oxygen molecule · ion · chains A
SO4 · Sulfate ion · ion · chains A
GOL · Glycerol · additive · 2 copies · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	280	0.70	0.84	29	HEM, OXY

Compared structures

2VYZ · Mutant Ala55Phe of Cerebratulus lacteus mini-hemoglobin · the same entry in another collection · chain A against A, TM-score 1.00
O76242 · AlphaFold monomer V2.0 prediction for neural hemoglobin (O76242) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O76242
Elsewhere: RCSB PDB 2VYZ · PDBe 2VYZ · UniProt O76242

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