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Structure of leafy transcription factor from arabidopsis thaliana in complex with DNA from AP1 promoter

Analyse Structure of leafy transcription factor from arabidopsis thaliana in complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2VY1
Type: protein + DNA
Length: 183 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein leafy; 5'-D(*TP*TP*AP*CP*GP*GP*AP*CP*CP*AP *CP*TP*GP*GP*TP*CP*CP*TP*TP*CP)-3'
UniProt: Q00958
Pockets: 1 · best druggability 0.50

Structure

x-ray diffraction · 2 distinct chains · 64% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein leafy	protein	163	64% helix, 1% strand	Q00958
W	5'-D(TPTPAPCPGPGPAPCPCPAP CPTPGPGPTPCPCPTPTPCP)-3'	dna	20	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	175	0.50	0.77	28	empty

Interfaces

1 interface between chains.

A–W · 444 Å² buried · 12 hydrogen bonds · protein-nucleic

Compared structures

2VY1 · Structure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA… · the same entry in another collection · chain A against A, TM-score 1.00
Q00958 · AlphaFold monomer V2.0 prediction for protein leafy (Q00958) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q00958
Elsewhere: RCSB PDB 2VY1 · PDBe 2VY1 · UniProt Q00958

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