Structure of rhodocytin

Structure

x-ray diffraction · 2 distinct chains · 19% helix, 34% strand (DSSP).

Ligands and binding sites

• NA · Sodium ion · metal · 4 copies · chains A, B
• CL · Chloride ion · ion · 2 copies · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

• A–B · 1950 Ų buried · 31 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 7 disulfide (disulfide).

Compared structures

• 2VRP · Structure of rhodocytin · the same entry in another collection · chain A against A, TM-score 1.00
• Q9I841 · AlphaFold monomer V2.0 prediction for snaclec rhodocytin subunit alpha (Q9I841) · a predicted model of the same protein · chain A against A, TM-score 0.94
• Q9I840 · AlphaFold monomer V2.0 prediction for snaclec rhodocytin subunit beta (Q9I840) · a predicted model of the same protein · chain B against A, TM-score 0.94

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt Q9I841
• Every structure of UniProt Q9I840
• Elsewhere: RCSB PDB 2VRP · PDBe 2VRP · UniProt Q9I841 · UniProt Q9I840