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Crystal structure of dithinonite reduced soybean ascorbate peroxidase mutant W41A.
Analyse Crystal structure of dithinonite reduced soybean ascorbate peroxidase mutant… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2VNZ
- Type
- protein
- Length
- 248 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ascorbate peroxidase
- EC
- 1.11.11.1
- UniProt
- Q43758
- Ligands
- HEM, NA
- Pockets
- 1 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Ascorbate peroxidase (EC 1.11.11.1) | protein | 248 | 55% helix, 2% strand | Q43758 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains X
- NA · Sodium ion · metal · 2 copies · chains X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 436 | 0.80 | 0.88 | 51 | HEM |
Compared structures
- 2VNZ · Crystal structure of dithinonite reduced soybean ascorbate peroxidase mutant W41A. · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q43758
- Elsewhere: RCSB PDB 2VNZ · PDBe 2VNZ · UniProt Q43758
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