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Structure of alcaligenes xylosoxidans in space group R3 - 1 of 2

Analyse Structure of alcaligenes xylosoxidans in space group R3 - 1 of 2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2VM3
Type: protein
Length: 333 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dissimilatory copper-containing nitrite reductase
UniProt: O68601
Ligands: CU, ZN
Pockets: 1 · best druggability 0.46

Structure

x-ray diffraction · 1 distinct chain · 11% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dissimilatory copper-containing nitrite reductase	protein	333	11% helix, 39% strand	O68601

Ligands and binding sites

CU · Copper (II) ion · metal · 2 copies · chains A
ZN · Zinc ion · metal · chains A
PG4 · Tetraethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	83	0.46	0.81	17	empty

Compared structures

2VM3 · Structure of Alcaligenes xylosoxidans in space group R3 - 1 of 2 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O68601
Elsewhere: RCSB PDB 2VM3 · PDBe 2VM3 · UniProt O68601

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