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RANASMURFIN

Analyse RANASMURFIN in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2VH3
Type: protein
Length: 225 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ranasmurfin
UniProt: P85511
Ligands: ZN, SO4

Structure

x-ray diffraction · 2 distinct chains · 62% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ranasmurfin	protein	112	65% helix, 0% strand	P85511
B	Ranasmurfin	protein	113	58% helix, 0% strand	P85511

Ligands and binding sites

ZN · Zinc ion · metal · chains A, B
SO4 · Sulfate ion · ion · 4 copies · chains A, B
GOL · Glycerol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 1028 Å² buried · 16 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 disulfide, 5 modified (disulfide, nonstandard, oxidation).

Compared structures

2VH3 · ranasmurfin · the same entry in another collection · chain A against A, TM-score 1.00
P85511 · AlphaFold monomer V2.0 prediction for ranasmurfin (P85511) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P85511
Elsewhere: RCSB PDB 2VH3 · PDBe 2VH3 · UniProt P85511

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